PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G013700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 159aa    MW: 17783.9 Da    PI: 5.8737
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G013700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.12.6e-5317113197
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          v+eq+r+lPianv+rimkk+lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++wa++ lGf++y+ pl+ yl++y
  Manes.15G013700.1.p  17 VKEQERLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTSEASEKCKKERRKTVNGDDVCWAMGALGFDEYAGPLTGYLQRY 106
                          589*************************************************************************************** PP

                NF-YB  91 relegek 97 
                          releg++
  Manes.15G013700.1.p 107 RELEGDR 113
                          *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-5313137IPR009072Histone-fold
SuperFamilySSF471132.02E-3920129IPR009072Histone-fold
PfamPF008085.8E-282387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.7E-165169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.7E-167088No hitNo description
PRINTSPR006156.7E-1689107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDDNTGAASA STEDGGVKEQ ERLLPIANVG RIMKKILPPN AKISKEAKET MQECVSEFIS  60
FVTSEASEKC KKERRKTVNG DDVCWAMGAL GFDEYAGPLT GYLQRYRELE GDRSANQEKA  120
NTEEKEDSSS YRNHFNQRNH QDVVVPPPPL LKFDKKRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4317108192Transcription factor HapC (Eurofung)
4g92_B8e-4317108192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516901.22e-75PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822481e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLB9RT324e-75B9RT32_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGVIT_05s0020g01350.t011e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-56nuclear factor Y, subunit B5